PUBLICATIONS

Journal Papers:

[22] I. Pushkarsky, Y. Lyb, W. Weaver, T-W. Su, O. Mudanyali, A. Ozcan, and D. Di Carlo, ”Automated single-cell motility analysis on a chip using lensfree microscopy”, Scientific Reports (Nature Publishing Group), 2014, DOI:10.1038/srep04717

[21] S. K. Vashista, O. Mudanyali, E. M. Schneidere, R. Zengerle, and A. Ozcan, ”Cellphone-based devices for bioanalytical sciences”, Analytical and Bioanalytical Chemistry, 2013, DOI:10.1007/s00216-013-7473-1

[20] Y. Hennequin, C.P. Allier, E. McLeod, O. Mudanyali, D. Migliozzi, A. Ozcan and J.-M. Dinten, "Optical detection and sizing of single nano-particles using continuous wetting films”, ACS Nano,  2013, DOI:10.1021/nn403431y

[19] O. Mudanyali, E. McLeod, W. Luo, A. Greenbaum, A.F. Coskun, Y. Hennequin, C.P. Allier, and A. Ozcan, "Wide-field optical imaging of single nano-particles and viruses using computational on-chip microscopy and self-assembled liquid nano-lenses", Nature Photonics, 2013, DOI:10.1038/nphoton.2012.337

[18] E. McLeod*, W. Luo*, O. Mudanyali*,  A. Greenbaum*, and A. Ozcan, "Toward Giga-pixel Nanoscopy On a Chip: A computational wide-field look at the nano-scale without the use of lenses ", Lab on a Chip, 2013, DOI: 10.1039/C3LC50222H  ( * Joint First Authors ) (Review Article)

[17] A. Greenbaum, W. Luo, T-W. Su, Z. Göröcs, L. Xue, S.O. Isikman, A.F. Coskun, O. Mudanyali, and A. Ozcan, ”Imaging without lenses: achievements and remaining challenges of wide-field on-chip microscopy”, Nature Methods, 2012, DOI:10.1038/nmeth.2114

[16] H. Zhu, S.O. Isikman, O. Mudanyali, A. Greenbaum, and A. Ozcan, ”Optical Imaging Techniques for Point-of-care Diagnostics”, Lab on a Chip, 2012, DOI:10.1039/C2LC40864C   (Invited Manuscript)

[15] O. Mudanyali, S. Dimitrov, U. Sikora, S. Padmanabhan, I. Navruz, and A. Ozcan, “Integrated Rapid-Diagnostic-Test Reader Platform on a Cellphone”, Lab on a Chip, 2012, DOI:10.1039/C2LC40235A

[14] S.O. Isikman, A. Greenbaum, M. Lee, W. Bishara, O. Mudanyali, T. Su, and A. Ozcan, “Lensfree computational microscopy tools for cell and tissue imaging at the point-of-care and in low-resource settings”, Analytical Cellular Pathology, 2012, DOI:10.3233/ACP-2012-0057

[13] O. Mudanyali, W. Bishara and A. Ozcan, “Lensfree Super-Resolution Holographic Microscopy using Wetting Films on a Chip”, Optics Express, 2011, DOI:10.1364/OE.19.017378

[12] W. Bishara, U. Sikora, O. Mudanyali, T. Su, O. Yaglidere, S. Luckhart and A. Ozcan, “Handheld and lensless microscope identifies malaria parasites”, SPIE Newsroom, 2011, DOI:10.1117/2.1201107.003812

[11]  S.O. Isikman, W. Bishara, O. Mudanyali, I. Sencan, T. Su, D. Tseng, O. Yaglidere, U. Sikora and A. Ozcan, “Lensfree On-Chip Microscopy and Tomography for Bio-Medical Applications”, IEEE Journal of Selected Topics in Quantum Electronics (JSTQE), 2011, DOI: 10.1109/JSTQE.2011.2161460 (Invited Manuscript) (Cover Article)

[10] W. Bishara, U. Sikora, O. Mudanyali, T. Su, O. Yaglidere, S. Luckhart and A. Ozcan, “Holographic pixel super-resolution in portable lensless on-chip microscopy using a fiber-optic array”, Lab on a Chip, 2011, DOI:10.1039/C0LC00684J

[9] O. Mudanyali, C. Oztoprak, D. Tseng, A. Erlinger and A. Ozcan, " Detection of waterborne parasites using field-portable and cost-effective lensfree microscopy", Lab on a Chip, 2010, DOI: 10.1039/ c004829a

[8] A. Ozcan, S.O. Isikman, O. Mudanyali, D. Tseng, I. Sencan, “Lensfree on-chip holography facilitates novel microscopy applications”, SPIE Newsroom, 2010, DOI: 10.1117/2.1201005.002947

[7] S. Seo, S.O. Isikman, I. Sencan, O. Mudanyali, T. Su, W. Bishara, A. Erlinger and A. Ozcan, “High-throughput Lensfree Blood Analysis On a Chip”, Analytical Chemistry, 2010, DOI: 10.1021/ac1007915

[6] D. Tseng*, O. Mudanyali*, C. Oztoprak, S.O. Isikman, I. Sencan, O. Yaglidere and A. Ozcan, “Lensfree Microscopy on a Cell-phone”, Lab on a Chip, 2010, DOI: 10.1039/c003477k    ( * Joint First Authors )  (Cover Article)

[5] O. Mudanyali, D. Tseng, C. Oh, S.O. Isikman, I. Sencan, W. Bishara, C. Oztoprak, S. Seo, B. Khademhosseini, and A. Ozcan, “Compact, Light-weight and Cost-effective Microscope based on Lensless Incoherent Holography for Telemedicine Applications”, Lab on a Chip, 2010, DOI: 10.1039/c000453g

[4] G.Stybayeva*, O. Mudanyali*, S. Seo, J. Silangcruz, M. Macal, E. Ramanculov, S. Dandekar, A. Erlinger, A. Ozcan, A. Revzin, “Lensfree Holographic Imaging of Antibody Microarrays for High-Throughput Detection of Leukocyte Numbers and Function”, Analytical Chemistry, 2010, DOI: 10.1021/ac100142a   ( * Joint First Authors )

[3] S.O. Isikman, I. Sencan, O. Mudanyali, W. Bishara, C. Oztoprak and A. Ozcan, “Color and Monochrome Lensless On-chip Imaging of Caenorhabditis Elegans Over a Wide Field-of-View”, Lab on a Chip, 2010, DOI: 10.1039/C001200A

[2] O. Mudanyali, A. Erlinger, S. Seo, TW Su., D. Tseng, A. Ozcan, "Lensless On-chip Imaging of Cells Provides a New Tool for High-throughput Cell-Biology and Medical Diagnostics", Journal of Visualized Experiments (JoVE), 2009, DOI: 10.3791/1650

[1] O. Mudanyali, S. Yildiz, O. Semerci, A. Yapar and I. Akduman, “A Microwave Tomographic Approach for Non-Destructive Testing of Dielectric Coated Metallic Surfaces”, IEEE Geoscience and Remote Sensing Letters, 2008, DOI: 10.1109/LGRS.2008.915602

 

Book Chapters:

[2] S. O. Isikman, A. Greenbaum, M. Lee, W. Bishara, O. Mudanyali, T. Su and A. Ozcan, "Lensfree Computational Microscopy Tools for Cell and Tissue Imaging at the Point-of-Care and in Low-Resource Settings", New Approaches to Cell and Tissue Imaging in Pathology, IOS Press (to be published in 2013) (Editor: Stanley Cohen)

[1] S. O. Isikman, W. Bishara, O. Mudanyali, T. Su, D. Tseng and A. Ozcan, "Lensfree Computational Microscopy Tools for On-Chip Imaging of Bio-Chips", Point of Care Diagnostics on a Chip, Springer (to be published in 2013)  (Editors: Robert M. Westervelt and David Issadore)

 

Conference Papers & Talks:

[41] O. Mudanyali, E. McLeod, W. Luo, A. Greenbaum, A.F. Coskun, J-M. Dinten, Y. Hennequin, C.P. Allier, and A. Ozcan, "High-throughput Imaging of Single Viruses using Self-assembled Nano-lenses and On-Chip Holography ", Conference on Lasers and Electro-Optics (CLEO), June 2013, San Jose, CA, USA

[40] E. McLeod, O. Mudanyali, W. Luo, A. Greenbaum, A.F. Coskun, J-M. Dinten, Y. Hennequin, C.P. Allier, and A. Ozcan, "Self-Assembled Nanolens Formation for Widefield Computational Imaging of Nanoparticles on a Chip", Conference on Lasers and Electro-Optics (CLEO), June 2013, San Jose, CA, USA

[39] O. Mudanyali, E. McLeod, W. Luo, A. Greenbaum, A.F. Coskun, J-M. Dinten, Y. Hennequin, C.P. Allier, and A. Ozcan, "Single nanoparticle and virus imaging using computational on-chip microscopy ", SPIE Photonics West, Frontiers in Biological Detection: From Nanosensors to Systems,  February 2013, San Francisco, CA, USA

[38] O. Mudanyali, S. Dimitrov, U. Sikora, S. Padmanabhan, I. Navruz, and A. Ozcan, “Universal rapid diagnostic test (RDT) reader on a cell-phone for real-time spatio-temporal mapping of infectious diseases", Advanced Biomedical and Clinical Diagnostic Systems XI,  February 2013, San Francisco, CA, USA

[37] O. Mudanyali, S. Dimitrov, U. Sikora, S. Padmanabhan, I. Navruz, and A. Ozcan, “Smart Rapid Diagnostics Test Reader running on a Cell-Phone for Real-time Mapping of Epidemics”, The Second International Workshop for Mobile Systems, Applications, and Services for Healthcare (mHealthSys 2012) , November 2012, University of California, Toronto, Canada (Invited Paper)

[36] O. Mudanyali and A. Ozcan, "Computational Microscopy on a Cell-phone: An Emerging Telemedicine Platform", French American Biotechnology Symposium (FABS), October 2012, Nice, France (Invited Talk)

[35] O. Mudanyali, S. Dimitrov, U. Sikora, S. Padmanabhan, I. Navruz, and A. Ozcan, “Cell-phone based Rapid-Diagnostic-Test Reader Platform for Spatio-temporal Mapping of Diseases,” 13th Annual UC Systemwide Bioengineering Symposium, June 2012, University of California, Berkeley, USA

[34] O. Mudanyali and A. Ozcan, "Lensfree Microscopy on a Cell-phone: There’s an App for that??", UCLA Health System Pathology & Laboratory Medicine Continuing Education Seminar, April 2012, Los Angeles, CA, USA

[33] O. Mudanyali, D. Tseng, C. Oztoprak, S. O. Isikman, I. Sencan, O. Yaglidere, and A. Ozcan, “Lab on a Cell-phone: Emerging Platform for Telemedicine and Global Health”, SPIE Defense, Security, and Sensing, April 2012, Baltimore, MD, USA

[32] O. Mudanyali, W. Bishara,  S. Nadipuram, U. Sikora, T. Su, O. Yaglidere, R.  Ramasawmy, K. Nielsen, and A. Ozcan, "Imaging of Malaria parasites using Portable Lensfree Microscopes",  Western Regional Meeting, January 2012, Carmel, CA

[31] O. Mudanyali, W. Bishara, and A. Ozcan, "Lensfree pixel super-resolution microscopy using thin wetting films on a chip", SPIE Photonics West, Optical Diagnostics and Sensing XII: Toward Point-of-Care Diagnostics, January 2012, San Francisco, CA

[30] O. Mudanyali, D. Tseng, S. O. Isikman, C. Oztoprak, I. Sencan, O. Yaglidere and A. Ozcan, "Compact and Cost-effective Lensless Telemedicine Microscopy for Global Health Applications", 2011 IEEE Global Humanitarian Technology Conference (GHTC'11), October 2011, Seattle, WA, USA

[29] O. Mudanyali, W. Bishara and A. Ozcan, “Lensfree Pixel-Super Resolution Microscopy using Wetting-films On a Chip”, The 15th International Conference on Miniaturized Systems for Chemistry and Life Sciences (MicroTAS), October 2011, Seattle, WA, USA

[28] O. Mudanyali, W. Bishara and A. Ozcan, “Lensfree Pixel-Super Resolution Microscopy using Wetting-films On a Chip”, BMES – Biomedical Engineering Society Annual Meeting , October 2011, Hartford, CT, USA

[27] W. Bishara, U. Sikora, O. Mudanyali, T. Su, O. Yaglidere, S. Luckhart and A. Ozcan, “Portable and Cost-effective Pixel Super-Resolution On-Chip Microscope for Telemedicine Applications”, IEEE Engineering in Medicine and Biology Society (EMBC’11), August-September 2011, Boston, MA, USA

[26] S. Nadipuram, O. Mudanyali, K. Nielsen, T. Brewer and A. Ozcan, "Novel lensfree microscope technology based on shadow imaging for detection of Giardia lamblia oocysts in stool", 49th Annual Meeting of the Infectious Diseases Society of America (IDSA), October 2011, Boston, MA, USA

[25] W. Bishara, U. Sikora, O. Mudanyali, T. Su, O. Yaglidere, S. Luckhart and A. Ozcan, “Portable and Cost-effective Pixel Super-Resolution Microscope for Telemedicine Applications”, 12th Annual UC Systemwide Bioengineering Symposium, June 2011, UC Santa Barbara, CA, USA

[24] O. Mudanyali, W. Bishara and A. Ozcan, “Lensfree On-chip Super Resolution Microscopy using Wetting-films”, 12th Annual UC Systemwide Bioengineering Symposium, June 2011, UC Santa Barbara, CA, USA

[23] W. Bishara, U. Sikora, O. Mudanyali, T. Su, O. Yaglidere, S. Luckhart and A. Ozcan, “Field-Portable Lensless Holographic Microscope using Pixel Super-Resolution”, OSA Topical Meeting on Computational Optical Sensing and Imaging, July 2011, Toronto, Canada

[22] O. Mudanyali, "Lensfree Telemedicine Microscopy on a Wireless Phone", UCLA ANUAL TECH FORUM, March 2011, Los Angeles, CA, USA    ( POSTER AWARD WINNER )

[21] O. Mudanyali, D. Tseng, C. Oztoprak, S. O. Isikman, I. Sencan, O. Yaglidere, and A. Ozcan, “Lab on a Cell-phone as an emerging Telemedicine Platform”, SPIE Defense, Security, and Sensing: Sensing Technologies for Global Health, Military Medicine, Disaster Response, and Environmental Monitoring, April 2011, Orlando, FL, USA

[20] S.O. Isikman, S. Seo, I. Sencan, O. Mudanyali, T. Su, W. Bishara, A. Erlinger, A. Ozcan, “On-chip blood analysis using lensless microscopy”, SPIE Defense, Security, and Sensing , April 2011, Orlando, FL, USA

[19] O. Mudanyali, D. Tseng, S. O. Isikman, C. Oztoprak, I. Sencan, W. Bishara, O. Yaglidere, and A. Ozcan, “Light-weight and Cost-effective Lensfree Microscopy for Wireless Health Applications”, MMVR18 / Nextmed / Medicine Meets Virtual Reality, February 2011, Newport Beach, CA, USA 

[18] O. Mudanyali, D. Tseng, S. O. Isikman, C. Oztoprak, I. Sencan, W. Bishara, O. Yaglidere, and A. Ozcan, “Lensfree Telemedicine Microscopy for Global Health Challenges”, SPIE/ Photonics West, Design and Quality for Biomedical Technologies IV, January 2011, San Francisco, CA, USA

[17] O. Mudanyali, C. Oztoprak, D. Tseng, A. Erlinger, and A. Ozcan, “Field-Portable Lensfree On-Chip Microscopy for Detection of Waterborne Parasites”, SPIE/ Photonics West, Frontiers in Biological Detection: From Nanosensors to Systems, January 2011, San Francisco, CA, USA

[16] S.O. Isikman, C. Oh, D.K. Tseng, O. Mudanyali, A. Ozcan, “A compact and light-weight differential interference contrast (DIC) microscope for telemedicine applications,” SPIE Photonics West, Advanced Biomedical and Clinical Diagnostic Systems IX, January 2011, San Francisco, CA, USA

[15] O. Mudanyali, C. Oztoprak, D. Tseng, A. Erlinger, A. Ozcan, “Water Quality Management using a Cost-effective and Field-portable Lensfree On-Chip Microscope,” The 14th International Conference on Miniaturized Systems for Chemistry and Life Sciences (MicroTAS), 2010, Groningen, Netherlands

[14] D. Tseng, O. Mudanyali, C. Oztoprak, S.O. Isikman, I. Sencan, O. Yaglidere and A. Ozcan, “Lensfree Telemedicine Microscope on a Wireless Phone,” The 14th International Conference on Miniaturized Systems for Chemistry and Life Sciences (MicroTAS), 2010, Groningen, Netherlands

[13] S.O. Isikman, S. Seo, I. Sencan, O. Mudanyali, T. Su, W. Bishara, A. Erlinger, A. Ozcan, “High-throughput Blood Analysis On a Chip using Lensless Digital Holography,” The 14th International Conference on Miniaturized Systems for Chemistry and Life Sciences (MicroTAS), 2010, Groningen, Netherlands

[12] O. Mudanyali, D. Tseng, S.O. Isikman, I. Sencan, W. Bishara, C. Oztoprak, S. Seo, B. Khademhosseini, and A. Ozcan, “Compact and Light-weight Telemedicine Microscope based on Lensfree On-Chip Imaging,” Biomedical Engineering Society (BMES) Annual Meeting, 2010, Austin, Texas, USA

[11] S.O. Isikman, I. Sencan, O. Mudanyali, W. Bishara, C. Oztoprak and A. Ozcan, “Lensfree Color and Monochrome On-chip Imaging of Caenorhabditis Elegans Over a Wide Field-of-View,” Biomedical Engineering Society (BMES) Annual Meeting, 2010, Austin, Texas, USA

[10] O. Mudanyali, D. Tseng, S.O. Isikman, I. Sencan, W. Bishara, C. Oztoprak, S. Seo, B. Khademhosseini, and A. Ozcan, “Light-weight, Field-portable and Cost-effective Lensfree Microscopy for Telemedicine Applications,” 11th Annual UC Systemwide Bioengineering Symposium, 2010, UC Davis, USA

[9] G. Stybayeva, O. Mudanyali, S. Seo, J. Silangcruz, M. Macal, E. Ramanculov, S. Dandekar, A. Erlinger, A. Ozcan, and A. Revzin, “Lensfree Holographic Imaging of Antibody Microarrays for High-Throughput Detection of Leukocyte Numbers and Function,” 11th Annual UC Systemwide Bioengineering Symposium, 2010, UC Davis, USA

[8] S.O. Isikman, I. Sencan, O. Mudanyali, W. Bishara, C. Oztoprak and A. Ozcan, “Wide Field-of-View Lensless Imaging of Caenorhabditis Elegans On a Chip”, OSA Conference on Lasers and Electro-optics (CLEO ’10), 2010, San Francisco USA

[7] S. O. Isikman, S. Seo, I. Sencan, D. Tseng, O. Mudanyali, T.W. Su, A. Erlinger, A. Ozcan, "Incoherent On-Chip Cell Holography for Subcellular Imaging and Point-of-Care Diagnostics", SPIE Photonics West BIOS Conference, 2010, San Francisco, USA

[6] O. Mudanyali and A. Yapar, “Microwave Remote Sensing of Deformations on Curved/Rough Surface under a Layered Medium”, Microwave Radiometry and Remote Sensing of the Environment (MICRORAD), 2008, Florence, Italy

[5] C. Tasdemir, O. Mudanyali, O. Semerci, S. Yildiz, and A. Yapar, “Non-Destructive Testing of Defects on Dielectric Layers”, International Conference on Inverse Problems in Engineering (ICIPE), 2008, Dourdan, Paris, France

[4] O. Mudanyali, Selda Yildiz, Oguz Semerci, and Cagla Tasdemir, “Non-destructive Testing of Dielectric Coated Metallic Surfaces”, The 2008 IEEE International Symposium on Antennas and Propagation, 2008, San Diego, USA

[3] O. Mudanyali, O. Ozdemir, A. Yapar, and H. Sahinturk, “Modeling of Rough Surfaces in Terms of Higher Order Surface Impedances”, The 2008 IEEE International Symposium on Antennas and Propagation, 2008, San Diego, USA

[2] O. Semerci, O. Mudanyali, and G.S. Unal, “Imaging of Perfectly Conducting Objects Buried in a Dielectric Cylinder”, Progress in Electromagnetics Research Symposium (PIERS), 2007, Prague, Czech Republic

[1] O. Mudanyali, S. Yildiz and O. Semerci, “Reconstruction of Perfectly Conducting Rough Surfaces Beyond a Layered Media”, Progress in Electromagnetics Research Symposium (PIERS), 2007, Beijing, China

Thesis:

[1] Modelling of Periodic Perfectly Conducting Rough Surfaces in terms of Higher Order Surface Impedances (M.Sc.)

[2] Reconstruction of perfectly conducting rough surfaces beyond a layered media (B.Sc.)