Publications

My profiles at DBLP, Google Scholar, Research Gate.

Journals and book chapters are marked with blue and red, respectively.

PLoS-ONE'15P. Kavak, B. Yüksel, S. Aksu, M.O. Külekci, T. Güngör, F. Hach, S. C. Sahinalp, Turkish Genome Project, C. Alkan, M. S. Sagiroglu. "Robustness of Massively Parallel Sequencing Platforms", PLoS ONE, 10(9):e0138259, doi:10.1371/journal.pone.0138259,2015.
TCS`15Atalay Mert İleri, M. Oğuzhan Külekci, Bojian Xu. "A Simple Yet Time-Optimal and Linear-Space Algorithm for Shortest Unique Substring Query", Theoretical Computer Science, 562:621-633, 2015.
DCC`15M. Oğuzhan Külekci, Sharma Thankachan. "Range selection queries in data-aware time and space", Proceedings of IEEE-Data Compression Conference, Pages: 73 - 82, Salt Lake, UT, USA, April 7–9, 2015.
IWBBIO`15B. Adaş, E. Bayraktar, S. Faro, I. E. Moustafa, M.O. Külekci. "Nucleotide Sequence Alignment and Compression via Shortest Unique Substring Identifiers", Bioinformatics and Biomedical Engineering, Lecture Notes in Computer Science, 9044:363-374, 2015.
SEA`15Boran Adaş, Ersin Bayraktar, M. Oğuzhan Külekci. "Huffman Coding versus Augmented Non-prefix-free Coding", Experimental Algorithms, Lecture Notes in Computer Science, 9125:315-326, 2015.
PSC'15Simone Faro, Domenice Cantano, M. Oğuzhan Külekci. "An Efficient Skip-Search Approach to the Order-Preserving Pattern Matching Problem", Proceedings of Prague Stringology Conference, pp. 22-35, Prague, Czech Republic, August 24–26, 2015.
PSC'15Tamanna Chhabra, M. Oğuzhan Külekci, Jorma Tarhio. "Alternative Algorithms for Order-Preserving Matching", Proceedings of Prague Stringology Conference, pp.36-46, Prague, Czech Republic, August 24–26, 2015.
JDA'14Simone Faro, M. Oğuzhan Külekci. "Fast and flexible packed string matching", Journal of Discrete Algorithms, 28:61–72, 2014.
DCC'14M. Oğuzhan Külekci. "Enhanced Variable Length Codes: Improved Compression with Efficient Random Access", Proceedings of IEEE Data Compression Conference, pp.362-371, Snow Bird, UT, USA, March 25-28, 2014.
CPM'14Atalay Mert Ileri, M. Oğuzhan Külekci, Bojian Xu. "Shortest Unique Substring Query Revisited", Combinatorial Pattern Matching, Lecture Notes in Computer Science, 8486:172–181, 2014.
PSC'13Simone Faro, M. Oğuzhan Külekci. "Towards a Very Fast Multiple String Matching Algorithm for Short Patterns", Proceedings of Prague Stringology Conference, pp.78-91, Prague, Czech Republic, September 2–4, 2013
ISIT'13M. Oğuzhan Külekci. "Uniquely–decodable and Directly Accesible Non–prefix–free Codes viaWavelet Trees", Proceedings of IEEE International Symposium on Information Theory, pp. 1969-1973, Istanbul, Turkey, July 7–12, 2013.
ALENEX'13Simone Faro, M. Oğuzhan Külekci. "Fast packed string matching for short patterns", Proceedings of Annual Meeting on Algorithm Engineering and Experiments, pp. 113-121, New Orleans, Louisiana, USA, January 6-8, 2013.
TJEECS'13Hüseyin Demirci, M. Şamil Sağıroğlu, M. Oğuzhan Külekci. "A time–memory trade-off approach for the solution of non–linear equation systems", Turkish Journal of Electrical Engineering and Computer Sciences, 21(1):186–197, 2013.
SPIRE'12Simone Faro, M. Oğuzhan Külekci. "Fast Multiple String Matching Using Streaming SIMD Extensions Technology", String Processing and Information Retrieval, Lecture Notes in Computer Science, 7608: 217-228, 2012.
ACM-BCB'12M. Oğuzhan Külekci. "On enumeration of DNA sequences", ACM Conference on Bioinformatics, Computational Biology and Biomedicine, pp. 442-449, Florida, Orlando, USA, October 7-10, 2012
COSE'12M. Oğuzhan Külekci. "On scrambling Burrows–Wheeler transform to provide privacy in lossless compression", Computers & Security, 31(1):26–32, 2012.
TCBB'12M. Oğuzhan Külekci, Bojian Xu, Jeffrey Scott Vitter. "Efficient maximal repeat finding using the Burrows–Wheeler transform and wavelet tree", IEEE/ACM Transactions on Computational Biology and Bioinformatics, 9(2):421–429, 2012.
CMPJ'12M. Oğuzhan Külekci, Jeffrey Scott Vitter, Bojian Xu. "Fast pattern matching via k-bit filtering based text decomposition", The Computer Journal, 55(1):62–68, 2012.
DCC'11M. Oğuzhan Külekci. "Compressed Context Modeling for Text Compression", Proceedings of IEEE Data Compression Conference, pp. 373-382, Snow Bird, UT, USA, March 29-31, 2011
BMC-Genomics'11M. Oğuzhan Külekci, Wing-Kai Hon, Rahul Shah, Jeffrey Scott Vitter, Bojian Xu. "PSI-RA: A parallel sparse index for genomic read alignment", BMC Genomics, 12:S7, 2011.
CPP'11M. Oğuzhan Külekci. "A method to ensure the confidentiality of compressed data", Proceedings of International Conference on Compression, Communication and Processing, pp. 203-209, Palinuro, Italy,June 21-24, 2011.
MCS'10M. Oğuzhan Külekci. "BLIM: A new bit-parallel pattern matching algorithm overcoming computer word size limitation", Mathematics in Computer Science, 3(4):407–420, 2010.
BIBM'10M. Oğuzhan Külekci, Jeffrey Scott Vitter, Bojian Xu. "Time and space efficient maximal repeat finding using Burrows–Wheeler transform and wavelet trees", Proceedings of IEEE International Conference on Bioinformatics & Biomedicine, pp. 622-625, Hong Kong, December, 2010.
BIBM'10M. Oğuzhan Külekci, Wing-Kai Hon, Rahul Shah, Jeffrey Scott Vitter, Bojian Xu. "PSIRA: A parallel sparse index for read alignment on genomes", Proceedings of IEEE International Conference on Bioinformatics & Biomedicine, pp. 663-668, Hong Kong, December, 2010.
ISCIS'10M. Oğuzhan Külekci, Jeffrey Scott Vitter, Bojian Xu. "Boosting pattern matching performance via k-bit filtering", Computer and Information Sciences, Lecture Notes in Electrical Engineering, 62:27–33, 2010.
PSC'09M. Oğuzhan Külekci. "Filter based fast matching of long patterns by using SIMD instructions", Proceedings of Prague Stringology Conference, pp.118–129, Prague, Czech Republic, August, 2009.
ISAAC'08M. Oğuzhan Külekci. "A method to overcome computer word size limitation in bit-parallel pattern matching", Algorithms and Computation, Lecture Notes in Computer Science, 5369:496–506, 2008.
ISCIS'07M. Oğuzhan Külekci. "TARA: An algorithm for searching multiple patterns on text files", Proceedings of 22nd International Symposium on Computer and Information Sciences, pp.1-6, November, 2007, Ankara, Turkey, 2007. Honoured by best paper award on data management track!
ICDMK'07M. Oğuzhan Külekci. "An empirical analysis of pattern scan order in pattern matching", Proceedings of International Conference on Data Mining and Knowledge Engineering, volume I, pages 337–342, London, UK, July, 2007
TAINN'06M. Oğuzhan Külekci, Kemal Oflazer. "An infrastructure for Turkish prosody generation in text-to-speech synthesis", Proceedings of 15th Turkish Symposium on Artificial Intelligence and Neural Networks, pp.49–57, Akyaka, Mugla, Turkey, 2006.
ISCIS'05M. Oğuzhan Külekci, Kemal Oflazer. "Pronunciation disambiguation in Turkish", Computer and Information Sciences, Lecture Notes in Computer Science, 3733:636–645, 2005.
SIU'04M. Oğuzhan Külekci, Kemal Oflazer. "An overview of NLP techniques used in TTS synthesis", Proceedings of Signal Processing Applications, pp.454-457, Kusadası, Turkey, April, 2004.
InterSpeech'01M. Oğuzhan Külekci, Mehmed Özkan. "Turkish word segmentation using morphological analyzer", Proceedings of 7th European Conference on Speech Communication and Technology, pp. 1053-1056, Aalborg, Denmark, September, 2001