Selected Publications
Journal Papers
-
Metin Ertas, Isa Yildirim, Mustafa Kamasak, and Aydin Akan,
"An Iterative Tomosynthesis Reconstruction Using
Total Variation Combined with Non-local Means Filtering",
Biomedical Engineering Online (2014). doi:10.1186/1475-925X-13-65.
-
Mustafa E. Kamasak, Bradley T. Christian,
Charles A. Bouman, and Evan D. Morris.
"Quality and Precision of Parametric Images
Created from PET Sinogram Data by
Direct Reconstruction: Proof of Concept",
IEEE Trans. on Medical Imaging (2014).
doi:10.1109/TMI.2013.2294627.
-
Mustafa E. Kamasak,
Biomedical Signal Processing and Control,
"Effects of Spatial Regularization in Kinetic
Parameter Estimation for Dynamic PET",
vol 9, 6-13, Jan. 2014,
doi: 10.1016/j.bspc.2013.08.011.
-
Metin Ertas, Isa Yildirim, Mustafa E. Kamasak,
and Aydin Akan. "Digital breast tomosynthesis image reconstruction
using 2D and 3D total variation minimization":
Biomedical Engineering Online 12 (2013).
doi:10.1186/1475-925X-12-112, p. 112.
-
Saeed Seyyedi, Kubra Cengiz, Mustafa Kamasak, and Isa Yildirim.
"An Object-Oriented Simulator for 3D Digital Breast Tomosynthesis Imaging System",
Comp. and Math. Meth. in Med.,
Volume 2013 (2013), Article ID 250689
doi:10.1155/2013/250689.
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Ilker Bayram and Mustafa E. Kamasak,
IEEE Trans. on Audio, Speech and
Lang. Proc.,
"A Simple Prior For Audio Signals",
vol 21(6), 1190-1200, June 2013.
doi: 10.1109/TASL.2013.2245652.
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Ilker Bayram and Mustafa E. Kamasak,
"Directional total variation",
IEEE Signal Proc. Letters,
vol 19, no 12, pp. 781-784,
2012,
doi: 10.1109/LSP.2012.2220349.
-
T. Avsar, D. Korkmaz, M. Tutuncu, N.O. Demirci, S. Saip,
M. E. Kamasak, A. Siva, E.T. Turanli,
Protein Biomarkers for Multiple Sclerosis:
Semi-quantitative Analysis of CBF Candidate
Protein Biomarkers in Different Forms
of Multiple Sclerosis,
Multiple Sclerosis Journal, Vol. 18, no 8, pp. 1081-1091,
2012.
doi: 10.1177/1352458511433303.
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Mustafa E. Kamasak. Computation of variance in compartment model parameter estimates
from dynamic PET data. Med. Phys., 39(5):2638-2648, May 2012.
doi: 10.1118/1.3702456.
-
G. Kaya, O. Ersoy, M.E. Kamasak, Support Vector Selection And
Adaptation for Remote Sensing Classification,
IEEE Trans. on Geoscience and Remote Sensing,
vol 49, no 6, pp. 2071-2079, June 2011
(10.1109/TGRS.2010.2096822).
pdf
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M.E. Kamasak, Clustering dynamic PET images on the Gaussian
distributed sinogram domain, Comput. Methods Programs Biomed.
93 (2009) 217-227.
pdf
original
-
M. Cavusoglu, T. Ciloglu, Y. Serinagaoglu, M. E. Kamasak, O. Erogul, and
T. Akcam, Investigation of sequential properties of snoring episodes
for obstructive sleep apnoea identification,
Physiol. Meas., vol. 29, no. 8, pp.879-898, Aug. 2008.
pdf
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M. Cavusoglu, M. E. Kamasak, O. Erogul, T. Ciloglu, Y. Serinagaoglu, and
T. Akcam, "An efficient method for snore/nonsnore classification of
sleep sounds," Physiol. Meas., vol. 28, no. 8, pp. 841-853, Aug. 2007.
pdf
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M. E. Kamasak and B. Bayraktar, "Clustering dynamic PET images on the
projection domain," IEEE Trans. on Nuclear Science, vol 54, no 3,
June 2007, pp 496-503.
original
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M.E. Kamasak, C.A. Bouman, E. Morris, K. Sauer, "Direct Reconstruction of
Kinetic Parameter Images from Dynamic PET Data",
IEEE Tran. on Medical Imaging,
vol 24, no 5, May 2005, pp 636-650.
manuscript
original
Abstracts
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M. E. Kamasak, E. D. Morris, C. A. Bouman, and B. T. Christian,
"Direct reconstruction of sinograms to parametric images of
18f-fallypride binding in monkey brain," in
Neuroimage, vol. 32, Copenhagen, Denmark, 6-8 July 2006, p. T92, suplement 2.
pdf
ppt
Patents
- P.O. Ozanar, M.E. Kamasak, L. Tavacioglu, G. Zorluoglu,
O.K. Kora, G. Kaptanoglu, B. Cangoz, "An algorithm to assist
cognitive performance assessment", Pub No: TPO 2013-G-449301
- M. Qazi, M.E. Kamasak, M. Dundar, G. Fung, S. Krishnan,
B. Rao, "Characterizations of Cardiac Motion with Spatial Relationship",
Pub No:US 2006/0247544 A1
pdf
Conference Papers
2014
-
Mustafa Cavusoglu, Harold Christopher Burger, Pablo E. Brockmann, Christian F. Poets,
Mustafa E. Kamasak, Osman Eroglu, and Michael S. Urschitz. "Automatic De-
tection of Snore Episodes in Paediatric Population". In: Proceedings of IEEE Signal
Processing and Communications Applications (SIU 2014). (in Turkish). Trabzon, Apr.
2014.
-
Metin Ertan, Isa Yildirim, Mustafa Kamasak, and Aydin Akan. "Image Denoising with
Nonlocal Means and Total Variation". In: Proceedings of IEEE Signal Processing and
Communications Applications (SIU 2014). (in Turkish). Trabzon, Apr. 2014.
-
Kubra Cengiz and Mustafa E. Kamasak. "Comparison of Algebraic Reconstruction
Techniques for Tomosynthesis". In: Proceedings of IEEE Signal Processing and
Communications Applications (SIU 2014). (in Turkish). Trabzon, Apr. 2014.
-
Kubra Cengiz and Mustafa Kamasak. "Comparison of Algebraic Reconstruction Techniques
for Tomosynthesis". In: Proceedings of International Conference on Systems,
Signals and Image Processing - IWSSIP 2014. Dubrovnik, Croatia, May 2014.
-
Metin Ertan, Mustafa Kamasak, Isa Yildirim, and Aydin Akan. "Prior Image Selection in
Limited Angle Tomographic Imaging". In: 27th International Symopsium on Computer
Based Medical Systems (CBMS2014). New York, May 2014.
-
Metin Ertan, Isa Yildirim, Mustafa Kamasak, and Aydin Akan. "An Iterative
Reconstruction for Tomosynthesis Imaging Using Non-Local Means". In: Proceedings of IEEE
International Conference on Imaging Systems and Techniques (IST 2014). Santorini,
Greece, Oct. 2014.
-
Metin Ertan, Isa Yildirim, Mustafa Kamasak, and Aydin Akan. "Initial Image
Selection in Limited Angle Tomographic Imaging". In: Proceedings of IEEE International
Conference on Imaging Systems and Techniques (IST 2014). Santorini, Greece, Oct.
2014.
-
Mustafa E. Kamasak, Bradley T. Christian, Charles A. Bouman, and Evan D. Morris.
"Quality and Precision of Parametric Images Created from PET Sinogram Data by
Direct Reconstruction". In: Proceedings of the 10th International Symposium on Func-
tional NeuroReceptor Mapping of the Living Brain (NRM14). Amsterdam, Netherland,
May 2014.
-
Gokhan Zorluoglu, Mustafa E. Kamasak, Leyla Tavacioglu, and Pinar Ozum Ozanar.
"Development of Mobile Cognitive Test Software Application on Situational Awareness".
In: Proceedings of National Congress on Medical Technologies (TIPTEKNO 2014). (in
Turkish). Kapadokya, Sept. 2014.
2013
-
Gokhan Zorluoglu, Leyla Tavacioglu, Mustafa E. Kamasak,
P. Bolat, U. Tac, and Kaan O. Kora.
"A cognitive test battery for situational awareness",
Proceedings of 5th National Maritime Congress,
Istanbul, Nov 11 2013.
-
Saeed Seyyedi, Isa Yildirim, and Mustafa E. Kamasak,
"Evaluating the effect of acquisition parameters in digital breast
tomosynthesis system with iterative
reconstruction methods on image quality",
Proceedings of 4th IEEE International Conference on eHealth
and Bioengineering (EHB2013), Iasi, Romania, Nov 21-23 2013.
-
Metin Ertas, Isa Yildirim, Mustafa E. Kamasak, and Aydin Akan,
"Comparison of 2d and 3d total variation minimization methods in
breast tomosynthesis imaging",
Proceedings of 4th IEEE International Conference on eHealth
and Bioengineering (EHB2013), Iasi, Romania, Nov 21-23 2013.
-
M. E. Kamasak, Y. E. Kiyak, I. Yildirim, and E. Oznergiz,
"Automated nanofiber diameter determination",
Proceedings of 7th International Advance Technologies
Symposium, Istanbul, Oct 30-Nov 1 2013.
-
P. O. Ozanar, M. E. Kamasak, L. Tavacioglu, G. Zorluoglu,
O. K. Kora, G. Kaptanoglu,
and B. Cangoz,
"The development of neurophysiologic test battery to use in the distinctive
diagnosis of Alzheimers disease", 3. Turkish-German Congress
on Psychiatry. Izmir, Turkiye, Sept. 2013.
-
Baris Sarikaya and Mustafa E. Kamasak,
"A Mobile Application for Prescription Drugs",
International Symposium on Health Informatics and Bioinformatics, (HIBIT 2013),
Ankara, Turkiye,
September 25-27 2013.
-
Erkan Akkur, Mustafa E. Kamasak, and Mehmet E. Aksoy.
"Comparison of digital mammography systems in terms of dose and image
quality",
Proceedings of National Congress on Medical Technologies
(TIPTEKNO 2013), Antalya, Oct 31-Nov 2 2013.
-
Saeed Seyyedi, Kubra Cengiz, Mustafa Kamasak, and Isa Yildirim. "An object-oriented
simulator for 3D digital breast tomosynthesis system". 8th Interna-
tional Symposium on Image and Signal Processing and Analysis (ISPA 2013), Trieste,
Italy, September 4-6 2013.
-
M. Kamasak, "Bias and Variance Analysis of PET Parameters
Estimated with Spatial Regularization",
Proceedings of IEEE Signal Processing and Communications
Applications (SIU 2013), Girne, N. Cyprus, April 24-26 2013. (in Turkish).
2012
-
Metin Ertas, Aydin Akan, Kubra Cengiz, Mustafa Kamasak,
Saeed Seyyedi and Isa Yildirim,
"3-D Tomosynthesis Image Reconstruction Using
Total Variation",
International Conference on BioMedical Computing
(BioMedCom 2012),
Washington DC, Dec 14-16, 2012.
-
Serkan Tuzun, Isa Yildirim, Mustafa Kamasak, and Aydin Akan.
"2D image reconstruction for tomosynthesis",
Proceedings of National Congress on Medical Technologies
(TIPTEKNO 2012), pages 167-170, Antalya, November 1-3 2012.
(in Turkish).
pdf
-
Metin Ertas, Isa Yildirim, Mustafa Kamasak, and Aydin Akan.
"Reconstruction for 3D tomosynthesis images with art and total
variation", Proceedings of National Congress on Medical Technologies
(TIPTEKNO 2012), pages 158-161, Antalya, November 1-3 2012.
(in Turkish).
pdf
-
Mehmet E. Aksoy, Mustafa E. Kamasak, Erkan Akkur, Ayhan Ucgul, Muzaffer Basak,
and Huseyin Alaca.
"Investigation of flat panel digital radiography systems in terms of
contrast-detail performance".
Proceedings of National Congress on Medical Technologies
(TIPTEKNO 2012), pages 162-166, Antalya, November 1-3 2012.
(in Turkish).
pdf
view
-
Ilker Bayram and Mustafa E. Kamasak, " A Directional Total Variation",
Proceedings of 20th European Signal Processing Conference (EUSIPCO-2012),
Aug 27-31, Bucharest, Romania, 2012.
pdf
view
-
Mehmet E. Aksoy, Mustafa E. Kamasak, Erkan Akkur, Ayhan Ucgul, Muzaffer Basak, and
Huseyin Alaca, "Evaluation and comparison of image quality for indirect
at panel systems with CsI and GOS scintillators",
Proceedings of International Symposium on Health Informatics
and Bioinformatics (HIBIT 2012), Kapadokya, Nevsehir, April 19-20 2012.
pdf
view
-
Mustafa E. Kamasak, "Computation of variance in compartment model parameter estimates from dynamic PET data", Int. Symp. on Biomedical Imaging (ISBI 2012),
Barcelona, Spain, May 2-5
2012.
pdf
view
-
Ilker Bayram and Mustafa E. Kamasak, "Directional total variation minimization",
Proceedings of IEEE Signal Processing and Communications Applications (SIU 2012), Oludeniz Fethiye Mugla, April 18-20 2012. (in Turkish).
pdf
view
2011
-
M. E. Kamasak, "Analysis of Kinetic Parameter Estimates for Dynamic PET",
Proceedings of IEEE Signal Processing and Communications Applications, April 20-22 2011,
Kemer Antalya (in Turkish).
pdf
view
2010
-
G. Kaya, O. Ersoy, and M. Kamasak,
"Spectral and Spatial Classification of Earthquake
Images by Support Vector Selection and Adaptation",
in International Conference of Soft Computing and Pattern Recognition (SoCPaR 2010)
Paris, December 7-10, 2010.
-
G. Kaya, O. Ersoy, and M. Kamasak,
"Hybrid SVM and SVSA Method for Classification of
Remote Sensing Images,"
in IEEE International Geoscience & Remote Sensing Symposium
(IGARSS 2010), Hawai, July 25 - 30, 2010.
pdf
2009
-
E. Avsar, M. Kamasak, Z. Cataltepe,
"Tek-Sinif Destek Vektör Makineleri Kullanilarak EEG
Isaretlerinin Siniflandirilmasi", Biyomut 2009.
pdf
-
G. Kaya, O. Ersoy, and M. Kamasak,
"Support Vector Selection and Adaptation",
International Symposium on Innovations in
Intelligent Systems and Applications (INISTA2009), 2009.
doc
pdf
-
G. Kaya, O. Ersoy, and M. Kamasak, "Support vector selection
and adaptation for classification of earthquake images,"
in IEEE International Geoscience & Remote Sensing Symposium
(IGARSS 2009), Cape Town, Africa, 2009.
pdf
-
G.T. Kaya, O. Ersoy, M.E. Kamasak,
"Support Vector Selection and Adaptation
and Its Application in Remote Sensing",
International Conference on Recent Advances
in Space Technologies (RAST 2009) 2009.
pdf
doc
2008
-
M. Cavusoglu, M. E. Kamasak, T. Ciloglu, Y. Serinagaoglu, and O. Erogul,
"Spectral envelope analysis of snoring signals,"
in Proceedings of The Sixth IASTED International Conference on
Biomedical Engineering (BIOMED2008),
Innsbruck, Austria, February 13 - 15 2008, pp. 473-477.
pdf
orig-pdf
2007
-
M. Cavusoglu, M. E. Kamasak, Y. N. Ertas, O. Erogul, Y. Serinagaoglu,
and T. Ciloglu, "The intensity and frequency analysis of snoring sounds
according to sleep stages," in Proceedings of Biyomut, Istanbul, Turkey,
21-22 May 2007, (in Turkish).
pdf
doc
-
M.E. Kamasak, C.A. Bouman, B.T. Christian, and E.D. Morris, "Imaging
D2-dopamine receptor concentration in non-human primate brain using
18f-fallypride," 15th European Signal Processing Conference,
Poznan, Poland, Sept 3 - 7 2007, pp. 2259-2262.
pdf
-
M.E. Kamasak, "Clustering dynamic PET images on the gaussian distributed
sinogram domain," 15th European Signal Processing Conference,
Poznan, Poland, Sept 3 - 7 2007, pp. 2272-2276.
pdf
-
M.E. Kamasak, C.A. Bouman, B.T. Christian, and E.D. Morris, "Imaging
D2-dopamine receptor using PET," Proceedings of IEEE Signal
Processing and Communications Applications, 2007, (in Turkish).
pdf
view
-
M. Cavusoglu, M.E. Kamasak, O. Erogul, T. Ciloglu, Y. Serinagaoglu, and
H.Birkent, "Spectral envelope analysis for simple snorers and obstructive
sleep apnea patients," Proceedings of IEEE Signal Processing and
Communications Applications, 2007, (in Turkish).
pdf
view
-
M. Cavusoglu, M.E. Kamasak, O. Erogul, T. Ciloglu, T. Akcam, and
Y. Serinagaoglu, "A software system for sleep and snoring analysis," in
Proceedings of International Symposium on Health Informatics and
Bioinformatics, Belek, Antalya, Turkey, April 30-May 2 2007.
pdf
original pdf
2006 and before
-
M. Cavusoglu, M. E. Kamasak, Y. Serinagaoglu, T. Akcam, S. Yetkin, F. Ozgen, and
O. Erogul, \Classification of snoring sounds based on robust regression algorithm and
its clinical application," in 7th Sleep Disorders Conference, Bodrum, Turkey, 26-29
October 2006, (in Turkish).
pdf
ppt
-
M.Cavusoglu, M.E. Kamasak, Y. Serinagaoglu, T. Akcam, and O. Erogul,
"Spectogram based analysis of snoring sounds for obstructive sleep apnea
patients," Proceedings of Biyomut, Istanbul, Turkey, 25-27 May
2006, (in Turkish)
pdf
doc.gz
-
E.D. Morris, M.E. Kamasak, B.T. Christian, and C.A.
Bouman,
"Visualizing all the fits: Evaluating the quality and precision of
parametric images created from direct reconstruction of PET sinogram
data,"
Int. Symp. on Biomedical Imaging, 2006.(
pdf,
original pdf)
slides(
ppt,
pdf)
-
M.E. Kamasak and B. Bayraktar,
"Unsupervised clustering of dynamic pet images on the projection
domain,"
Proc. of SPIE Conf. on Medical Imaging: Image Processing,
San Diego, CA, February 12-17 2006.
pdf
- M.E. Kamasak, C.A. Bouman, E. Morris, K. Sauer, Reconstruction of Kinetic
Parameter Images Directly from Dynamic PET Sinograms,
Proc. of SPIE Conf. on Medical Imaging: Image Processing, San Diego, CA,
Feb. 12-17 2005, vol. 5747, pp 400-412.
pdf
- M.E. Kamasak, C.A. Bouman, E. Morris, K. Sauer, Parametric Reconstruction of
Kinetic PET Data with Plasma Function Estimation,
Proc. of SPIE Conf. on Electronic Imaging: Computational
Imaging, San Jose, CA, Jan. 16-21 2005, vol. 5674, pp. 293--305.
pdf
slides
-
M. Kamasak, C.A. Bouman, E. Morris, K. Sauer, "Direct Reconstruction of
Kinetic Parameter Images from Dynamic PET Data", Proceedings of the 37th
Asilomar Conference on Signals, Systems, and Computers, Pacific Grove,
CA, Nov. 9-11, 2003, pp 1919-1923 (invited paper).
pdf
slides
-
L. Slivovsky, J. Allebach, C.A. Bouman, G. Chiu, E. Delp, M. Figuera, M. Kamasak,
J. Krogmeier, C. Rosenberg, L. Torres, "An Undergraduate Research Experience in a
Mobile Communications Projects Course", ASEE 2003, June 22-25, Nashville, Tennesee.
gziped pdf
-
Mustafa Kamasak, Anand V. Deshpande, Kok Leong Thoon, Charles A. Bouman,
George T. C. Chiu, Jan P. Allebach, "Dynamic Print Modes for InkJet
Printing", NIP 17, Florida, 2001.
pdf
slides
-
A.V. Deshpande, M. Kamasak, K.L. Thoon, G.T.-C. Chiu, C. Bouman,
J. Allebach, S. Fedigan, D. Schafer and C. Cole,
"Development of an Inkjet Carriage Motion Controller for
Dynamic Print Mode Control",
2nd IFAC Conference on Mechatronic Systems, California, Dec 2002.
pdf
-
Anand V. Deshpande, Mustafa Kamasak, Kok Leong Thoon, George T. -C. Chiu,
Charles A. Bouman, Jan P. Allebach, Steve Fedigan, Dana Schafer, and
Charles Cole,
"Design and Implementation of a DSP based Inkjet Printer Motion Control
System for Dynamic Print Mode Control", NIP 17, Florida, 2001.
pdf
-
Kamasak M., Sankur B., "Face Recognition Under Lossy Compression", PRIP'99
, Minsk, Belarus, 1999.
pdf
-
Kamasak M., Sankur B., "Performance of Face Recognition Algorithms on
Compressed Face Databases", SIU'99, Ankara, Turkey, 1999.
pdf
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